Plot lorentz curves for variable range

Plots the original spectrum and all generated Lorentz curves and save the result as png under the filepath.

Superseded by plot_spectrum() since metabodecon v1.2.0. Will be replaced with v2.

Usage

plot_lorentz_curves_save_as_png(
  deconv_result,
  x_range = c(),
  y_range = c(),
  out_dir = ".",
  ask = TRUE
)

Arguments

deconv_result

Saved result of the MetaboDecon1D() function

x_range

Row vector with two entries consisting of the ppm start and the ppm end value to scale the range of the x-axis (optional)

y_range

Row vector with two entries consisting of the ppm start and the ppm end value to scale the range of the y-axis (optional)

out_dir

Path to the directory where the png files should be saved. Default is the current working directory.

ask

Logical value. Whether to ask for confirmation from the user before writing files to disk. Default is TRUE.

Value

NULL, called for side effects.

See also

MetaboDecon1D(), plot_triplets(), plot_spectrum_superposition_save_as_png()

Examples

sim <- metabodecon_file("bruker/sim_subset")
sim_decon <- generate_lorentz_curves_sim(sim)
png_dir <- tmpdir("sim_decon/pngs", create = TRUE)
plot_lorentz_curves_save_as_png(sim_decon, out_dir = png_dir, ask = FALSE)
#> Plot Lorentz curves of sim_01
#> Plot Lorentz curves of sim_02
dir(png_dir, full.names = TRUE)
#> [1] "/tmp/RtmpuYVEs7/metabodecon/sim_decon/pngs/sim_01_lorentz_curves.png"
#> [2] "/tmp/RtmpuYVEs7/metabodecon/sim_decon/pngs/sim_02_lorentz_curves.png"